RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g03990.1 View Network Show in Genome Browser |
| Other Names | Os06g0130400 |
| Description | aminotransferase, classes I and II, domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 1629717-1633629 Nucleotide Length: 1629 |
| Protein-coding | LOC_Os06g03990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g55420 LOC_Os01g55540 LOC_Os02g56300 LOC_Os01g53450 LOC_Os01g70380 LOC_Os03g14800 LOC_Os01g70370 LOC_Os01g70360 LOC_Os02g14110 |
| Downstream Genes | LOC_Os06g35540 LOC_Os11g31640 LOC_Os10g11200 LOC_Os10g41150 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn01100 rn01110 |
| Metacyc Pathways | ETHYL-PWY PWY-4361 |
| Reference | |
|---|---|
| PubMed | 17012402 21487048 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g03990.1 |
| Rice Genome Annotation | LOC_Os06g03990.1 |
| Ricechip | LOC_Os06g03990.1 |
| KEGG | osa:4340002 dosa:Os06t0130400-01 |
| Entrez-Gene | 4340002 |