RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g04070.1 View Network Show in Genome Browser |
| Other Names | Os06g0131400,Os06g0131300 |
| Description | pyridoxal-dependent decarboxylase protein, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 1674045-1677406 Nucleotide Length: 2109 |
| Protein-coding | LOC_Os06g04070 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g19280 LOC_Os03g60976 LOC_Os03g60992 LOC_Os02g14190 |
| Downstream Genes | LOC_Os07g12890 LOC_Os06g33710 LOC_Os07g22600 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00330 rn01100 |
| Metacyc Pathways | PWY-43 ARGDEG-III-PWY PWY-40 PWY0-823 PWY0-1299 PWY-6305 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g04070.1 |
| Rice Genome Annotation | LOC_Os06g04070.1 |
| Ricechip | LOC_Os06g04070.1 |
| KEGG | osa:4340008 dosa:Os06t0131300-00 |