RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g04270.1 View Network Show in Genome Browser |
| Other Names | Os06g0133800 |
| Description | transketolase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 1808766-1812362 Nucleotide Length: 2232 |
| Protein-coding | LOC_Os06g04270 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g02820 LOC_Os02g32030 LOC_Os01g53900 LOC_Os01g53450 LOC_Os04g32020 LOC_Os02g50620 LOC_Os04g24140 LOC_Os03g44300 LOC_Os01g52470 LOC_Os01g62870 LOC_Os03g56460 More.. |
| Downstream Genes | LOC_Os09g33500 LOC_Os08g42410 LOC_Os07g49520 LOC_Os07g07470 LOC_Os08g05830 LOC_Os12g42230 LOC_Os10g41150 LOC_Os11g26850 LOC_Os09g32810 LOC_Os07g08030 LOC_Os09g08910 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00030 rn00710 rn01100 rn01110 rn01120 rn01051 |
| Metacyc Pathways | P124-PWY P21-PWY NONOXIPENT-PWY DRIBOPMET-PWY CALVIN-PWY P185-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g04270.1 |
| Rice Genome Annotation | LOC_Os06g04270.1 |
| Ricechip | LOC_Os06g04270.1 |
| KEGG | osa:4340025 dosa:Os06t0133800-01 |
| Entrez-Gene | 4340025 |