RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g04280.1 View Network Show in Genome Browser |
| Other Names | Os06g0133900 |
| Description | 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 1816175-1819804 Nucleotide Length: 1548 |
| Protein-coding | LOC_Os06g04280 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g06200 LOC_Os05g45920 LOC_Os01g40640 LOC_Os03g62780 LOC_Os02g11050 LOC_Os03g51600 LOC_Os03g45920 LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 LOC_Os01g62840 More.. |
| Downstream Genes | LOC_Os09g30418 LOC_Os09g30412 LOC_Os08g39140 LOC_Os12g03720 LOC_Os06g37180 LOC_Os11g03900 LOC_Os11g14220 LOC_Os10g35290 LOC_Os08g13930 LOC_Os07g38730 LOC_Os06g46000 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00400 rn01100 rn01110 |
| Metacyc Pathways | ARO-PWY PWY-6163 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g04280.1 |
| Rice Genome Annotation | LOC_Os06g04280.1 |
| Ricechip | LOC_Os06g04280.1 |
| KEGG | osa:4340026 dosa:Os06t0133900-01 |
| Entrez-Gene | 4340026 |