RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g04300.1 View Network Show in Genome Browser |
| Other Names | Os06g0134050 |
| Description | tRNA 2-phosphotransferase 1, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 1822766-1826383 Nucleotide Length: 861 |
| Protein-coding | LOC_Os06g04300 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g04290 LOC_Os04g10750 LOC_Os04g10690 LOC_Os03g05610 LOC_Os03g05620 LOC_Os06g02570 LOC_Os03g04360 LOC_Os03g05640 LOC_Os02g54340 LOC_Os04g10800 LOC_Os01g46860 More.. |
| Downstream Genes | LOC_Os10g30790 LOC_Os10g30770 LOC_Os08g45000 LOC_Os06g09290 LOC_Os12g08070 LOC_Os06g21950 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g04300.1 |
| Rice Genome Annotation | LOC_Os06g04300.1 |
| Ricechip | LOC_Os06g04300.1 |
| KEGG | osa:9267091 dosa:Os06t0134050-01 |
| Entrez-Gene | 9267091 |