RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g04380.1 View Network Show in Genome Browser |
| Other Names | Os06g0134800 |
| Description | aminomethyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 1872634-1875911 Nucleotide Length: 1206 |
| Protein-coding | LOC_Os06g04380 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g53230 LOC_Os02g04170 LOC_Os05g49220 LOC_Os03g55640 LOC_Os04g58390 LOC_Os01g48760 LOC_Os01g68120 LOC_Os03g02970 LOC_Os04g43050 LOC_Os03g38740 LOC_Os02g16709 More.. |
| Downstream Genes | LOC_Os11g32480 LOC_Os08g10649 LOC_Os09g28000 |
| Pathways | |
|---|---|
| Metacyc Pathways | GLYCLEAV-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g04380.1 |
| Rice Genome Annotation | LOC_Os06g04380.1 |
| Ricechip | LOC_Os06g04380.1 |
| KEGG | osa:4340033 dosa:Os06t0134800-01 |
| Entrez-Gene | 4340033 |