RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g04450.2 View Network Show in Genome Browser |
| Other Names | Os06g0135900 |
| Description | Sec1 family transport protein, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 1900866-1909008 Nucleotide Length: 1980 |
| Protein-coding | LOC_Os06g04450 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g14654 LOC_Os03g06760 LOC_Os03g58840 LOC_Os03g06960 LOC_Os02g11890 LOC_Os03g57310 LOC_Os03g52650 LOC_Os02g32740 LOC_Os02g04320 LOC_Os01g73230 LOC_Os02g55970 More.. |
| Downstream Genes | LOC_Os12g13590 LOC_Os07g07000 LOC_Os12g35360 LOC_Os06g39050 LOC_Os10g27990 LOC_Os07g09600 LOC_Os06g07200 LOC_Os06g07830 LOC_Os11g06810 LOC_Os06g51410 LOC_Os10g23090 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR3979-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g04450.2 |
| Rice Genome Annotation | LOC_Os06g04450.2 |
| Ricechip | LOC_Os06g04450.2 |
| KEGG | osa:4340037 dosa:Os06t0135900-01 |
| Entrez-Gene | 4340037 |