RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g04620.1 View Network Show in Genome Browser |
| Other Names | Os06g0137700 |
| Description | GDP-mannose 4,6 dehydratase 2, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 2017778-2019458 Nucleotide Length: 1128 |
| Protein-coding | LOC_Os06g04620 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g43510 LOC_Os03g14450 LOC_Os04g40950 LOC_Os03g61560 LOC_Os02g57990 LOC_Os04g10010 LOC_Os03g18740 LOC_Os04g10000 LOC_Os02g57180 LOC_Os03g29170 LOC_Os04g33240 More.. |
| Downstream Genes | LOC_Os06g44270 LOC_Os06g44260 LOC_Os11g37890 LOC_Os10g28200 LOC_Os06g25439 LOC_Os07g49120 LOC_Os10g01044 LOC_Os07g48244 LOC_Os09g34090 LOC_Os08g20200 LOC_Os08g44360 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00051 rn00520 rn01100 rn00052 rn01110 |
| Metacyc Pathways | DTDPRHAMSYN-PWY PWY-66 GDPRHAMSYN-PWY UDPNACETYLGALSYN-PWY PWY-3821 P61-PWY GALACTMETAB-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g04620.1 |
| Rice Genome Annotation | LOC_Os06g04620.1 |
| Ricechip | LOC_Os06g04620.1 |
| KEGG | osa:4340050 dosa:Os06t0137700-01 |
| Entrez-Gene | 4340050 |