RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g05080.1 View Network Show in Genome Browser |
| Other Names | Os06g0142700 |
| Description | cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 2243716-2246728 Nucleotide Length: 465 |
| Protein-coding | LOC_Os06g05080 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g32120 LOC_Os05g23620 LOC_Os01g70960 LOC_Os03g27290 LOC_Os04g32660 LOC_Os03g59220 LOC_Os01g49190 LOC_Os04g24520 LOC_Os05g47980 LOC_Os05g34770 LOC_Os02g41820 More.. |
| Downstream Genes | LOC_Os09g08910 LOC_Os07g31300 LOC_Os07g42910 LOC_Os10g17280 LOC_Os07g12890 LOC_Os06g43850 LOC_Os07g10500 LOC_Os11g08940 LOC_Os11g48040 LOC_Os08g14860 LOC_Os09g20900 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-3781 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g05080.1 |
| Rice Genome Annotation | LOC_Os06g05080.1 |
| Ricechip | LOC_Os06g05080.1 |
| KEGG | osa:4340088 dosa:Os06t0142700-01 |
| Entrez-Gene | 4340088 |