RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os06g05090.1 View Network Show in Genome Browser
Other Names	Os06g0142800
Description	methyltransferase domain containing protein, expressed
Gene Attributes	Chromosome: Chr6 CDS Coordinates (5'-3'): 2247852-2250860 Nucleotide Length: 1143
Protein-coding	LOC_Os06g05090

Gene Ontology Classification
GO	Name	Type	Code
GO:0016043	cellular component organization	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0009791	post-embryonic development	Biological Process	IEA
GO:0006464	protein modification process	Biological Process	IEA
GO:0000003	reproduction	Biological Process	IEA
GO:0016740	transferase activity	Molecular Function	IEA
GO:0005829	cytosol	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os03g63410 LOC_Os02g45820 LOC_Os01g14020 LOC_Os01g40660 LOC_Os01g38510 LOC_Os03g51984 LOC_Os02g02410 LOC_Os06g03790 LOC_Os05g44360 LOC_Os03g61560 LOC_Os03g25050 More..
Downstream Genes	LOC_Os08g15030 LOC_Os06g39260 LOC_Os07g32900 LOC_Os07g10830 LOC_Os09g38530 LOC_Os07g42960 LOC_Os07g14270 LOC_Os06g46580 LOC_Os07g38970 LOC_Os06g45390 LOC_Os06g07210 More..

Pathways
KEGG Pathways	rn00380 rn00624 rn01120 rn00340 rn00350 rn00130 rn01100 rn01110
Metacyc Pathways	PWY-4021

Reference
PubMed	21853042

Database Links
Gramene	LOC_Os06g05090.1
Rice Genome Annotation	LOC_Os06g05090.1
Ricechip	LOC_Os06g05090.1
KEGG	osa:4340089 dosa:Os06t0142800-01
Entrez-Gene	4340089