RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g05100.1 View Network Show in Genome Browser |
| Other Names | Os06g0142900 |
| Description | transketolase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 2250559-2256639 Nucleotide Length: 2169 |
| Protein-coding | LOC_Os06g05100 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g44780 LOC_Os01g14630 LOC_Os05g14580 LOC_Os06g04270 LOC_Os03g45400 LOC_Os05g46580 LOC_Os04g42000 LOC_Os01g50050 LOC_Os01g50760 LOC_Os02g36340 |
| Downstream Genes | LOC_Os07g39270 LOC_Os11g14230 LOC_Os12g42230 LOC_Os12g08220 LOC_Os07g41090 LOC_Os07g06980 LOC_Os09g36420 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00900 rn01100 rn01110 |
| Metacyc Pathways | NONMEVIPP-PWY PYRIDOXSYN-PWY THISYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g05100.1 |
| Rice Genome Annotation | LOC_Os06g05100.1 |
| Ricechip | LOC_Os06g05100.1 |
| KEGG | osa:4340090 dosa:Os06t0142900-02 |
| Entrez-Gene | 4340090 |