RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g05180.4 View Network Show in Genome Browser |
| Other Names | Os06g0143900 |
| Description | coatomer subunit beta, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 2320805-2324145 Nucleotide Length: 555 |
| Protein-coding | LOC_Os06g05180 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g50350 LOC_Os03g50340 LOC_Os05g24601 LOC_Os01g17430 LOC_Os01g61710 LOC_Os03g12590 LOC_Os05g38610 LOC_Os02g21250 LOC_Os05g23600 LOC_Os01g62840 LOC_Os03g63710 More.. |
| Downstream Genes | LOC_Os11g07280 LOC_Os09g04110 LOC_Os07g10150 LOC_Os08g28080 LOC_Os10g35560 LOC_Os08g16600 LOC_Os12g03720 LOC_Os08g13930 LOC_Os11g03900 LOC_Os06g45120 LOC_Os10g22380 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g05180.4 |
| Rice Genome Annotation | LOC_Os06g05180.4 |
| Ricechip | LOC_Os06g05180.4 |
| KEGG | osa:4340097 dosa:Os06t0143900-01 |
| Entrez-Gene | 4340097 |