RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g05660.1 View Network Show in Genome Browser |
| Other Names | Os06g0149400 |
| Description | NAP domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 2558015-2562242 Nucleotide Length: 1137 |
| Protein-coding | LOC_Os06g05660 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g53190 LOC_Os01g62230 LOC_Os03g06670 LOC_Os05g11730 LOC_Os04g25550 LOC_Os03g51200 LOC_Os03g18570 LOC_Os03g18580 LOC_Os01g10840 LOC_Os04g53770 LOC_Os02g14130 More.. |
| Downstream Genes | LOC_Os08g33100 LOC_Os07g36140 LOC_Os12g34510 LOC_Os10g28230 LOC_Os12g25120 LOC_Os07g36130 LOC_Os08g38300 LOC_Os06g47840 LOC_Os06g35530 LOC_Os06g48750 LOC_Os11g08300 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g05660.1 |
| Rice Genome Annotation | LOC_Os06g05660.1 |
| Ricechip | LOC_Os06g05660.1 |
| KEGG | osa:4340137 dosa:Os06t0149400-01 |
| Entrez-Gene | 4340137 |