RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g05690.1 View Network Show in Genome Browser |
| Other Names | Os06g0149700 |
| Description | cysteine synthase, chloroplast/chromoplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 2574177-2576722 Nucleotide Length: 1020 |
| Protein-coding | LOC_Os06g05690 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009856 | pollination | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g32880 LOC_Os04g54800 LOC_Os03g50510 LOC_Os02g51410 LOC_Os03g63940 LOC_Os03g47120 LOC_Os04g46930 LOC_Os03g03430 LOC_Os01g01302 LOC_Os03g51600 LOC_Os03g11660 More.. |
| Downstream Genes | LOC_Os06g07960 LOC_Os06g07860 LOC_Os06g12150 LOC_Os06g20390 LOC_Os11g26850 LOC_Os11g14220 LOC_Os08g04180 LOC_Os06g48750 LOC_Os06g45120 LOC_Os07g38730 LOC_Os06g37440 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn00920 rn01100 rn01120 |
| Metacyc Pathways | CYSTSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g05690.1 |
| Rice Genome Annotation | LOC_Os06g05690.1 |
| Ricechip | LOC_Os06g05690.1 |
| KEGG | osa:4340140 dosa:Os06t0149700-00 |
| Entrez-Gene | 4340140 |