RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g05890.1 View Network Show in Genome Browser |
| Other Names | Os06g0152200 |
| Description | B-box zinc finger family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 2695460-2699503 Nucleotide Length: 1083 |
| Protein-coding | LOC_Os06g05890 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0019748 | secondary metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g61760 LOC_Os04g45200 LOC_Os03g41080 LOC_Os01g52010 LOC_Os03g53300 LOC_Os02g20970 LOC_Os01g51980 LOC_Os03g60710 LOC_Os05g02020 LOC_Os04g58390 |
| Downstream Genes | LOC_Os12g10510 LOC_Os09g04440 LOC_Os09g15340 LOC_Os09g35730 LOC_Os07g10770 LOC_Os08g07760 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5519 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g05890.1 |
| Rice Genome Annotation | LOC_Os06g05890.1 |
| Ricechip | LOC_Os06g05890.1 |
| KEGG | osa:4340156 dosa:Os06t0152200-01 |
| Entrez-Gene | 4340156 |