RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os06g06750.1 View Network Show in Genome Browser
Other Names	Os06g0162800
Description	OsMADS5 - MADS-box family gene with MIKCc type-box, expressed
Gene Attributes	Chromosome: Chr6 CDS Coordinates (5'-3'): 3162801-3169415 Nucleotide Length: 678
Protein-coding	LOC_Os06g06750

Gene Ontology Classification
GO	Name	Type	Code
GO:0009653	anatomical structure morphogenesis	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0030154	cell differentiation	Biological Process	IEA
GO:0009908	flower development	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os03g54160 LOC_Os01g55040 LOC_Os04g53930 LOC_Os01g22710 LOC_Os03g52320 LOC_Os02g04490 LOC_Os04g35700 LOC_Os03g03610 LOC_Os02g35010 LOC_Os02g38020 LOC_Os06g06090 More..
Downstream Genes	LOC_Os07g01820 LOC_Os11g40100 LOC_Os12g31350 LOC_Os11g10100 LOC_Os09g12800 LOC_Os07g19560 LOC_Os07g41370 LOC_Os06g08380 LOC_Os07g37510 LOC_Os07g37530 LOC_Os07g38950 More..

miRNA Regulations
miRNAs	osa-miR3979-5p

Reference
PubMed	20003164 17640358

Database Links
Gramene	LOC_Os06g06750.1
Rice Genome Annotation	LOC_Os06g06750.1
Ricechip	LOC_Os06g06750.1
KEGG	osa:4340218 dosa:Os06t0162800-01
Entrez-Gene	4340218