RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g07080.1 View Network Show in Genome Browser |
| Other Names | Os06g0167000 |
| Description | pre-mRNA-processing-splicing factor 8, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 3363867-3368261 Nucleotide Length: 3300 |
| Protein-coding | LOC_Os06g07080 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g56970 LOC_Os03g61750 LOC_Os01g51390 |
| Downstream Genes | LOC_Os12g44390 LOC_Os07g45064 LOC_Os11g45590 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2275d |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g07080.1 |
| Rice Genome Annotation | LOC_Os06g07080.1 |
| Ricechip | LOC_Os06g07080.1 |
| KEGG | osa:4340248 dosa:Os06t0167000-02 |
| Entrez-Gene | 4340248 |