RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g07580.1 View Network Show in Genome Browser |
| Other Names | Os06g0172600 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 3656474-3657130 Nucleotide Length: 189 |
| Protein-coding | LOC_Os06g07580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g62350 LOC_Os05g38520 LOC_Os05g48310 LOC_Os05g48220 LOC_Os03g60400 LOC_Os01g61814 LOC_Os02g27760 LOC_Os01g59990 LOC_Os05g40820 LOC_Os04g52361 LOC_Os02g54470 More.. |
| Downstream Genes | LOC_Os10g27174 LOC_Os12g03090 LOC_Os11g03400 LOC_Os08g02410 LOC_Os10g30070 LOC_Os08g02400 LOC_Os08g44480 LOC_Os07g10720 LOC_Os06g35730 LOC_Os07g07709 LOC_Os11g05562 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g07580.1 |
| Rice Genome Annotation | LOC_Os06g07580.1 |
| Ricechip | LOC_Os06g07580.1 |
| KEGG | osa:4340273 dosa:Os06t0172600-00 |
| Entrez-Gene | 4340273 |