RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g07780.1 View Network Show in Genome Browser |
| Other Names | Os06g0174400 |
| Description | vesicle-associated membrane protein, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 3773667-3776566 Nucleotide Length: 666 |
| Protein-coding | LOC_Os06g07780 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g10370 LOC_Os06g07200 LOC_Os03g57310 LOC_Os03g52650 LOC_Os02g11890 LOC_Os03g57760 LOC_Os03g58840 LOC_Os03g06960 LOC_Os01g55700 LOC_Os03g17020 LOC_Os02g32740 More.. |
| Downstream Genes | LOC_Os08g01880 LOC_Os07g07000 LOC_Os06g39050 LOC_Os07g09600 LOC_Os06g09850 LOC_Os07g14540 LOC_Os09g19910 LOC_Os08g44430 LOC_Os08g23730 LOC_Os08g38720 LOC_Os12g44250 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g07780.1 |
| Rice Genome Annotation | LOC_Os06g07780.1 |
| Ricechip | LOC_Os06g07780.1 |
| KEGG | osa:4340278 dosa:Os06t0174400-01 |
| Entrez-Gene | 4340278 |