RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g07878.1 View Network Show in Genome Browser |
| Other Names | Os06g0176000 |
| Description | peptidase, T1 family, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 3828204-3829961 Nucleotide Length: 753 |
| Protein-coding | LOC_Os06g07878 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g08280 LOC_Os02g04100 LOC_Os01g32800 LOC_Os03g11570 LOC_Os01g16190 LOC_Os05g30800 LOC_Os02g53060 LOC_Os06g04800 LOC_Os03g63430 LOC_Os02g11050 LOC_Os04g40850 More.. |
| Downstream Genes | LOC_Os08g41730 LOC_Os09g32800 LOC_Os11g40140 LOC_Os07g49150 LOC_Os06g43570 LOC_Os06g46380 LOC_Os09g33986 LOC_Os08g43540 LOC_Os07g25420 LOC_Os09g02284 LOC_Os12g15590 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g07878.1 |
| Rice Genome Annotation | LOC_Os06g07878.1 |
| Ricechip | LOC_Os06g07878.1 |
| KEGG | osa:4340285 dosa:Os06t0176000-01 |
| Entrez-Gene | 4340285 |