RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g08530.1 View Network Show in Genome Browser |
| Other Names | Os06g0184300 |
| Description | ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 4213119-4218603 Nucleotide Length: 2823 |
| Protein-coding | LOC_Os06g08530 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g01600 LOC_Os03g61970 LOC_Os02g57640 LOC_Os03g36780 LOC_Os03g04220 LOC_Os03g14990 LOC_Os03g63410 LOC_Os03g24940 LOC_Os02g45650 |
| Downstream Genes | LOC_Os06g47350 LOC_Os08g39140 LOC_Os09g30418 LOC_Os09g30412 LOC_Os08g09350 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5157a-5p osa-miR5157b-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g08530.1 |
| Rice Genome Annotation | LOC_Os06g08530.1 |
| Ricechip | LOC_Os06g08530.1 |
| KEGG | osa:4340327 dosa:Os06t0184300-01 |
| Entrez-Gene | 4340327 |