RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g09660.1 View Network Show in Genome Browser |
| Other Names | Os06g0196700 |
| Description | auxin response factor, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 4926492-4932177 Nucleotide Length: 3168 |
| Protein-coding | LOC_Os06g09660 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g43410 LOC_Os03g43400 LOC_Os05g39240 LOC_Os01g61550 LOC_Os01g61510 LOC_Os01g65000 LOC_Os03g62200 LOC_Os02g34580 LOC_Os03g53500 |
| Downstream Genes | LOC_Os12g40900 LOC_Os12g40890 LOC_Os08g31460 LOC_Os09g35790 LOC_Os08g43334 LOC_Os12g01420 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g09660.1 |
| Rice Genome Annotation | LOC_Os06g09660.1 |
| Ricechip | LOC_Os06g09660.1 |
| KEGG | osa:9270361 dosa:Os06t0196700-01 |
| Entrez-Gene | 9270361 |