RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g09850.3 View Network Show in Genome Browser |
| Other Names | Os06g0198800 |
| Description | 25.3 kDa vesicle transport protein, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 5013414-5016652 Nucleotide Length: 609 |
| Protein-coding | LOC_Os06g09850 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g64650 LOC_Os03g42320 LOC_Os03g58840 LOC_Os03g06960 LOC_Os03g12590 LOC_Os04g52460 LOC_Os04g44810 LOC_Os01g73300 LOC_Os01g23620 LOC_Os05g15160 LOC_Os05g07870 More.. |
| Downstream Genes | LOC_Os07g10150 LOC_Os07g09600 LOC_Os12g05810 LOC_Os08g01880 LOC_Os08g25624 LOC_Os12g37360 LOC_Os07g14540 LOC_Os08g44430 LOC_Os08g34970 LOC_Os12g44250 LOC_Os09g12600 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g09850.3 |
| Rice Genome Annotation | LOC_Os06g09850.3 |
| Ricechip | LOC_Os06g09850.3 |
| KEGG | osa:9271327 dosa:Os06t0198800-01 |
| Entrez-Gene | 9271327 |