RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g09890.4 View Network Show in Genome Browser |
| Other Names | Os06g0199200 |
| Description | smr domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 5036116-5041239 Nucleotide Length: 1596 |
| Protein-coding | LOC_Os06g09890 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g02770 LOC_Os03g11670 LOC_Os04g52290 LOC_Os03g60910 LOC_Os02g53140 |
| Downstream Genes | LOC_Os12g44170 LOC_Os12g37550 LOC_Os12g02320 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g09890.4 |
| Rice Genome Annotation | LOC_Os06g09890.4 |
| Ricechip | LOC_Os06g09890.4 |
| KEGG | osa:4340405 dosa:Os06t0199200-01 |
| Entrez-Gene | 4340405 |