RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g10620.1 View Network Show in Genome Browser |
| Other Names | Os06g0208300 |
| Description | transcription elongation factor SPT5 homolog 1, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 5523780-5528576 Nucleotide Length: 2280 |
| Protein-coding | LOC_Os06g10620 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g05860 LOC_Os02g01560 LOC_Os01g25610 LOC_Os01g04730 LOC_Os03g61030 LOC_Os04g56800 LOC_Os01g59140 LOC_Os02g02510 LOC_Os03g44484 LOC_Os01g08970 LOC_Os03g38960 More.. |
| Downstream Genes | LOC_Os12g05430 LOC_Os07g43060 LOC_Os11g04370 LOC_Os12g04160 LOC_Os09g02284 LOC_Os06g46930 LOC_Os07g07610 LOC_Os12g37370 LOC_Os10g10990 LOC_Os09g19560 LOC_Os06g48230 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g10620.1 |
| Rice Genome Annotation | LOC_Os06g10620.1 |
| Ricechip | LOC_Os06g10620.1 |
| KEGG | osa:4340446 dosa:Os06t0208300-01 |
| Entrez-Gene | 4340446 |