RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g11180.1 View Network Show in Genome Browser |
| Other Names | Os06g0215300 |
| Description | OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 5862163-5869596 Nucleotide Length: 2052 |
| Protein-coding | LOC_Os06g11180 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g48100 LOC_Os02g04480 LOC_Os05g35520 LOC_Os05g51790 LOC_Os01g54240 LOC_Os01g72890 LOC_Os01g59860 LOC_Os01g10790 LOC_Os02g45110 LOC_Os02g49150 |
| Downstream Genes | LOC_Os09g29950 LOC_Os12g06910 LOC_Os06g51410 LOC_Os07g23169 LOC_Os08g16790 LOC_Os07g03130 LOC_Os06g23370 LOC_Os12g19040 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn01100 rn01110 |
| Metacyc Pathways | PWY-5041 ETHYL-PWY SAM-PWY PWY-4361 METHIONINE-DEG1-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g11180.1 |
| Rice Genome Annotation | LOC_Os06g11180.1 |
| Ricechip | LOC_Os06g11180.1 |
| KEGG | osa:4340482 dosa:Os06t0215300-01 |
| Entrez-Gene | 4340482 |