RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g11190.1 View Network Show in Genome Browser |
| Other Names | Os06g0215400 |
| Description | OsPOP13 - Putative Prolyl Oligopeptidase homologue, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 5869895-5876421 Nucleotide Length: 2040 |
| Protein-coding | LOC_Os06g11190 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g48510 LOC_Os03g56800 LOC_Os05g49150 LOC_Os02g57660 LOC_Os05g27870 LOC_Os03g59590 LOC_Os03g05730 LOC_Os02g46130 LOC_Os03g28960 LOC_Os03g10190 LOC_Os02g03890 More.. |
| Downstream Genes | LOC_Os07g42180 LOC_Os06g41590 LOC_Os07g07260 LOC_Os06g43760 LOC_Os07g44970 LOC_Os06g48640 LOC_Os10g41960 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g11190.1 |
| Rice Genome Annotation | LOC_Os06g11190.1 |
| Ricechip | LOC_Os06g11190.1 |
| KEGG | osa:4340483 dosa:Os06t0215400-01 |
| Entrez-Gene | 4340483 |