RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g11240.1 View Network Show in Genome Browser |
| Other Names | Os06g0215900 |
| Description | 12-oxophytodienoate reductase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 5894721-5896352 Nucleotide Length: 1143 |
| Protein-coding | LOC_Os06g11240 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g42350 LOC_Os02g56130 LOC_Os02g08480 LOC_Os02g42330 LOC_Os04g27060 LOC_Os04g26910 LOC_Os02g03100 LOC_Os05g44210 LOC_Os04g26870 LOC_Os06g11210 LOC_Os01g05840 More.. |
| Downstream Genes | LOC_Os12g41590 LOC_Os12g04440 LOC_Os11g04670 LOC_Os06g11290 LOC_Os06g37410 LOC_Os06g11280 LOC_Os08g03450 LOC_Os09g21110 LOC_Os07g44140 LOC_Os07g44110 LOC_Os07g11870 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-735 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g11240.1 |
| Rice Genome Annotation | LOC_Os06g11240.1 |
| Ricechip | LOC_Os06g11240.1 |
| KEGG | osa:4340486 dosa:Os06t0215900-01 |
| Entrez-Gene | 4340486 |