RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g11330.1 View Network Show in Genome Browser |
| Other Names | Os06g0217300 |
| Description | OsMADS55 - MADS-box family gene with MIKCc type-box, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 5953593-5963184 Nucleotide Length: 600 |
| Protein-coding | LOC_Os06g11330 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0045182 | translation regulator activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g08380 LOC_Os01g55040 LOC_Os03g54160 LOC_Os03g03610 LOC_Os04g35700 LOC_Os03g54170 LOC_Os02g35010 LOC_Os02g38020 LOC_Os02g55880 LOC_Os06g06090 LOC_Os03g17700 More.. |
| Downstream Genes | LOC_Os07g01820 LOC_Os11g10100 LOC_Os09g26180 LOC_Os06g27890 LOC_Os07g41370 LOC_Os08g41950 LOC_Os09g32948 LOC_Os06g51270 LOC_Os11g40100 LOC_Os12g31350 LOC_Os09g12800 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g11330.1 |
| Rice Genome Annotation | LOC_Os06g11330.1 |
| Ricechip | LOC_Os06g11330.1 |
| KEGG | osa:4340495 dosa:Os06t0217300-01 |
| Entrez-Gene | 4340495 |