RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g11420.1 View Network Show in Genome Browser |
| Other Names | Os06g0218000 |
| Description | SKIP/SNW domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 6027823-6029445 Nucleotide Length: 1623 |
| Protein-coding | LOC_Os06g11420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g21990 LOC_Os05g22260 LOC_Os04g28090 LOC_Os03g27970 LOC_Os02g01740 LOC_Os05g07050 LOC_Os03g15700 LOC_Os02g04480 LOC_Os02g05310 LOC_Os03g53220 LOC_Os02g39050 More.. |
| Downstream Genes | LOC_Os07g44970 LOC_Os06g33250 LOC_Os06g12910 LOC_Os12g15420 LOC_Os07g49410 LOC_Os12g42140 LOC_Os06g41750 LOC_Os11g42420 LOC_Os11g48090 LOC_Os09g33980 LOC_Os10g18150 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g11420.1 |
| Rice Genome Annotation | LOC_Os06g11420.1 |
| Ricechip | LOC_Os06g11420.1 |
| KEGG | dosa:Os06t0218000-00 |