RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g11500.1 View Network Show in Genome Browser |
| Other Names | Os06g0218500 |
| Description | MCM9 - Putative minichromosome maintenance MCM family subunit 9, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 6086798-6088248 Nucleotide Length: 2025 |
| Protein-coding | LOC_Os06g11500 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g11050 LOC_Os03g58430 LOC_Os05g07700 LOC_Os02g14059 LOC_Os03g58050 LOC_Os05g11710 LOC_Os01g10820 LOC_Os03g18410 LOC_Os03g55150 LOC_Os01g48770 LOC_Os02g15610 More.. |
| Downstream Genes | LOC_Os06g39870 LOC_Os07g08660 LOC_Os11g29190 LOC_Os07g10660 LOC_Os06g16290 LOC_Os07g07709 LOC_Os06g35730 LOC_Os08g01620 LOC_Os10g28640 LOC_Os06g14750 LOC_Os12g21798 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR818a osa-miR818b osa-miR818c osa-miR818d osa-miR818e osa-miR1436 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00860 rn01100 rn01110 |
| Metacyc Pathways | CHLOROPHYLL-SYN |
| Reference | |
|---|---|
| PubMed | 18755073 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g11500.1 |
| Rice Genome Annotation | LOC_Os06g11500.1 |
| Ricechip | LOC_Os06g11500.1 |
| KEGG | osa:4340503 dosa:Os06t0218500-01 |
| Entrez-Gene | 4340503 |