RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g11960.1 View Network Show in Genome Browser |
| Other Names | Os06g0223200 |
| Description | 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 6369182-6370694 Nucleotide Length: 453 |
| Protein-coding | LOC_Os06g11960 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g18310 LOC_Os05g07130 LOC_Os04g02820 LOC_Os02g32030 LOC_Os02g38920 LOC_Os06g04510 LOC_Os01g53900 LOC_Os04g40950 LOC_Os03g14450 LOC_Os02g07260 LOC_Os06g01950 More.. |
| Downstream Genes | LOC_Os08g37140 LOC_Os06g14740 LOC_Os12g04120 LOC_Os11g04320 LOC_Os12g04110 LOC_Os10g08550 LOC_Os06g45710 LOC_Os08g03290 LOC_Os09g20820 LOC_Os09g30418 LOC_Os09g30412 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn00260 rn00680 rn01100 rn01110 rn01120 |
| Metacyc Pathways | P124-PWY ANAEROFRUCAT-PWY GLUCONEO-PWY PWY-1042 PWY-3801 GLYCOLYSIS PWY-2221 PWY-1622 PWY-6142 PWY-5484 ANAGLYCOLYSIS-PWY P341-PWY P122-PWY PWY-5723 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g11960.1 |
| Rice Genome Annotation | LOC_Os06g11960.1 |
| Ricechip | LOC_Os06g11960.1 |
| KEGG | dosa:Os06t0223200-00 |