RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g11990.1 View Network Show in Genome Browser |
| Other Names | Os06g0223800 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 6401419-6407785 Nucleotide Length: 3378 |
| Protein-coding | LOC_Os06g11990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g32110 LOC_Os03g14250 LOC_Os01g16030 LOC_Os01g25540 LOC_Os05g38720 LOC_Os05g44070 LOC_Os01g59150 LOC_Os05g32500 LOC_Os02g52500 LOC_Os04g42620 LOC_Os03g62090 More.. |
| Downstream Genes | LOC_Os08g13350 LOC_Os09g32080 LOC_Os07g44350 LOC_Os07g44090 LOC_Os11g14220 LOC_Os07g01370 LOC_Os06g36050 LOC_Os07g48370 LOC_Os07g38490 LOC_Os07g26440 LOC_Os09g23360 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5807 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g11990.1 |
| Rice Genome Annotation | LOC_Os06g11990.1 |
| Ricechip | LOC_Os06g11990.1 |
| KEGG | osa:4340531 dosa:Os06t0223800-01 |
| Entrez-Gene | 4340531 |