RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g12220.1 View Network Show in Genome Browser |
| Other Names | Os06g0226600 |
| Description | HVA22, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 6559753-6563394 Nucleotide Length: 582 |
| Protein-coding | LOC_Os06g12220 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g15690 LOC_Os05g49170 LOC_Os02g44870 LOC_Os01g53240 LOC_Os05g02060 LOC_Os03g19220 LOC_Os02g47650 LOC_Os03g24900 LOC_Os04g48350 LOC_Os02g45450 LOC_Os02g10190 More.. |
| Downstream Genes | LOC_Os09g37020 LOC_Os12g24580 LOC_Os07g05720 LOC_Os07g36250 LOC_Os12g37650 LOC_Os11g05390 LOC_Os07g40620 LOC_Os06g42850 LOC_Os07g10770 LOC_Os07g43390 LOC_Os07g41600 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g12220.1 |
| Rice Genome Annotation | LOC_Os06g12220.1 |
| Ricechip | LOC_Os06g12220.1 |
| KEGG | osa:4340552 dosa:Os06t0226600-01 |
| Entrez-Gene | 4340552 |