RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g12450.1 View Network Show in Genome Browser |
| Other Names | Os06g0229800 |
| Description | soluble starch synthase 2-3, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 6748358-6753338 Nucleotide Length: 2433 |
| Protein-coding | LOC_Os06g12450 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g52460 LOC_Os01g44220 LOC_Os05g50380 LOC_Os02g32660 LOC_Os04g33460 LOC_Os03g55090 LOC_Os01g63270 LOC_Os05g32710 LOC_Os05g37060 |
| Downstream Genes | LOC_Os09g12660 LOC_Os08g25734 LOC_Os07g13980 LOC_Os06g51084 LOC_Os06g26234 LOC_Os09g29404 LOC_Os08g40930 LOC_Os07g46790 LOC_Os07g43390 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00500 rn01100 rn01110 |
| Metacyc Pathways | PWY-622 GLYCOGENSYNTH-PWY |
| Reference | |
|---|---|
| PubMed | 19473328 21595523 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g12450.1 |
| Rice Genome Annotation | LOC_Os06g12450.1 |
| Ricechip | LOC_Os06g12450.1 |
| KEGG | osa:4340567 dosa:Os06t0229800-01 |
| Entrez-Gene | 4340567 |