RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g12990.1 View Network Show in Genome Browser |
| Other Names | Os06g0236900 |
| Description | tRNA methyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 7118829-7120448 Nucleotide Length: 780 |
| Protein-coding | LOC_Os06g12990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g37870 LOC_Os03g58340 LOC_Os03g06190 LOC_Os03g49210 LOC_Os06g06410 LOC_Os03g22880 LOC_Os01g37770 LOC_Os03g22350 LOC_Os01g51620 LOC_Os05g48422 LOC_Os04g43140 More.. |
| Downstream Genes | LOC_Os08g31810 LOC_Os10g10434 LOC_Os07g29320 LOC_Os07g08030 LOC_Os12g03822 LOC_Os11g03990 LOC_Os10g31520 LOC_Os07g20580 LOC_Os09g18320 LOC_Os07g34740 LOC_Os08g32090 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g12990.1 |
| Rice Genome Annotation | LOC_Os06g12990.1 |
| Ricechip | LOC_Os06g12990.1 |
| KEGG | osa:4340601 dosa:Os06t0236900-01 |
| Entrez-Gene | 4340601 |