RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g13030.1 View Network Show in Genome Browser |
| Other Names | Os06g0237300 |
| Description | OsLIM - LIM domain protein, putative actin-binding protein and transcription factor, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 7133789-7140003 Nucleotide Length: 3912 |
| Protein-coding | LOC_Os06g13030 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005856 | cytoskeleton | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g17970 LOC_Os06g04510 LOC_Os01g23590 LOC_Os03g14450 LOC_Os05g03430 LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 |
| Downstream Genes | LOC_Os10g08550 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g13030.1 |
| Rice Genome Annotation | LOC_Os06g13030.1 |
| Ricechip | LOC_Os06g13030.1 |
| KEGG | osa:4340605 dosa:Os06t0237300-01 |
| Entrez-Gene | 4340605 |