RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g13660.1 View Network Show in Genome Browser |
| Other Names | Os06g0245800 |
| Description | alanyl-tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 7574978-7581553 Nucleotide Length: 2799 |
| Protein-coding | LOC_Os06g13660 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g67510 LOC_Os03g43850 LOC_Os01g71690 LOC_Os02g33500 LOC_Os01g55900 LOC_Os04g57230 LOC_Os02g06300 LOC_Os03g17070 LOC_Os04g51792 LOC_Os05g03050 LOC_Os01g71190 More.. |
| Downstream Genes | LOC_Os11g19720 LOC_Os12g31370 LOC_Os11g04954 LOC_Os12g04980 LOC_Os11g40150 LOC_Os08g19850 LOC_Os10g40650 LOC_Os09g39180 LOC_Os07g30240 LOC_Os11g13850 LOC_Os12g08730 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g13660.1 |
| Rice Genome Annotation | LOC_Os06g13660.1 |
| Ricechip | LOC_Os06g13660.1 |
| KEGG | osa:9266147 dosa:Os06t0245800-01 |
| Entrez-Gene | 9266147 |