RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g13720.1 View Network Show in Genome Browser |
| Other Names | Os06g0246500 |
| Description | dehydrogenase E1 component domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 7602364-7605812 Nucleotide Length: 1197 |
| Protein-coding | LOC_Os06g13720 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g44300 LOC_Os06g01630 LOC_Os02g01500 LOC_Os01g22520 LOC_Os05g06750 LOC_Os04g32020 LOC_Os06g04270 LOC_Os02g10070 LOC_Os04g19740 LOC_Os02g32490 LOC_Os04g58110 More.. |
| Downstream Genes | LOC_Os09g33500 LOC_Os08g42410 LOC_Os12g42230 LOC_Os07g22720 LOC_Os09g24320 LOC_Os12g08170 LOC_Os08g33440 LOC_Os06g30460 LOC_Os07g49520 LOC_Os07g07470 LOC_Os11g33240 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2118a |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn00020 rn00620 rn00650 rn01110 rn01120 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g13720.1 |
| Rice Genome Annotation | LOC_Os06g13720.1 |
| Ricechip | LOC_Os06g13720.1 |
| KEGG | osa:4340640 dosa:Os06t0246500-01 |
| Entrez-Gene | 4340640 |