RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g14740.1 View Network Show in Genome Browser |
| Other Names | Os06g0258900 |
| Description | NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 8301780-8316932 Nucleotide Length: 4131 |
| Protein-coding | LOC_Os06g14740 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g38920 LOC_Os04g40950 LOC_Os02g07260 LOC_Os02g51590 LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 LOC_Os04g58110 LOC_Os05g41640 LOC_Os04g02820 LOC_Os02g32030 More.. |
| Downstream Genes | LOC_Os09g20820 LOC_Os06g45710 LOC_Os08g03290 LOC_Os09g30418 LOC_Os09g30412 LOC_Os08g39140 LOC_Os07g49250 LOC_Os06g48750 LOC_Os09g02700 LOC_Os12g25690 LOC_Os12g38000 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00625 rn01120 rn00627 rn00626 rn00903 rn01110 rn00363 rn00624 rn00280 rn01100 rn00680 rn00710 rn00030 rn00480 |
| Metacyc Pathways | VALDEG-PWY ANAEROFRUCAT-PWY P185-PWY GLUCONEO-PWY PWY-1042 CALVIN-PWY PWY-3801 GLYCOLYSIS OXIDATIVEPENT-PWY RUMP-PWY P122-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g14740.1 |
| Rice Genome Annotation | LOC_Os06g14740.1 |
| Ricechip | LOC_Os06g14740.1 |
| KEGG | osa:4340684 dosa:Os06t0258900-01 |
| Entrez-Gene | 4340684 |