RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g15420.1 View Network Show in Genome Browser |
| Other Names | Os06g0265000 |
| Description | asparagine synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 8758769-8765753 Nucleotide Length: 1776 |
| Protein-coding | LOC_Os06g15420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g65260 LOC_Os04g55720 LOC_Os01g48960 LOC_Os05g35580 LOC_Os04g43650 LOC_Os02g52940 LOC_Os04g53210 LOC_Os03g18130 LOC_Os03g57220 LOC_Os01g69970 LOC_Os02g19970 More.. |
| Downstream Genes | LOC_Os12g03720 LOC_Os11g03900 LOC_Os12g38630 LOC_Os07g46460 LOC_Os06g44460 LOC_Os08g34720 LOC_Os07g05820 LOC_Os11g41160 LOC_Os08g41790 LOC_Os10g22570 LOC_Os09g32820 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00250 rn00910 rn01100 rn01110 rn01120 rn00230 |
| Metacyc Pathways | ASPARAGINESYN-PWY ASPARAGINE-BIOSYNTHESIS DENOVOPURINE2-PWY PWY-841 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g15420.1 |
| Rice Genome Annotation | LOC_Os06g15420.1 |
| Ricechip | LOC_Os06g15420.1 |
| KEGG | osa:4340706 dosa:Os06t0265000-01 |
| Entrez-Gene | 4340706 |