RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g16980.2 View Network Show in Genome Browser |
| Other Names | Os06g0281400 |
| Description | DNA topoisomerase I family protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 9840889-9856980 Nucleotide Length: 3492 |
| Protein-coding | LOC_Os06g16980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g58830 LOC_Os01g27730 LOC_Os02g06370 LOC_Os05g49150 LOC_Os05g37884 LOC_Os03g22890 LOC_Os01g62440 LOC_Os03g44530 LOC_Os01g49330 LOC_Os04g18200 LOC_Os03g22880 More.. |
| Downstream Genes | LOC_Os06g45980 LOC_Os09g29840 LOC_Os06g40040 LOC_Os10g32550 LOC_Os10g42170 LOC_Os10g35010 LOC_Os12g42370 LOC_Os11g26030 LOC_Os07g41190 LOC_Os08g16600 LOC_Os08g15030 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR435 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g16980.2 |
| Rice Genome Annotation | LOC_Os06g16980.2 |
| Ricechip | LOC_Os06g16980.2 |
| KEGG | osa:9271035 dosa:Os06t0281400-01 |
| Entrez-Gene | 9271035 |