RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g19660.1 View Network Show in Genome Browser |
| Other Names | Os06g0300800 |
| Description | WD domain, G-beta repeat domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 11219921-11228576 Nucleotide Length: 4005 |
| Protein-coding | LOC_Os06g19660 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g56210 LOC_Os03g53720 LOC_Os06g14470 LOC_Os05g05860 |
| Downstream Genes | LOC_Os12g06020 LOC_Os11g05650 LOC_Os07g31340 LOC_Os07g32430 LOC_Os08g33120 LOC_Os09g02284 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR399h |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g19660.1 |
| Rice Genome Annotation | LOC_Os06g19660.1 |
| Ricechip | LOC_Os06g19660.1 |
| KEGG | osa:4340825 dosa:Os06t0300800-01 |
| Entrez-Gene | 4340825 |