RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g19680.1 View Network Show in Genome Browser |
| Other Names | Os06g0301000 |
| Description | zinc finger, C3HC4 type domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 11237429-11242834 Nucleotide Length: 1503 |
| Protein-coding | LOC_Os06g19680 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g15350 LOC_Os01g62244 LOC_Os03g11440 LOC_Os05g38550 LOC_Os06g09330 LOC_Os02g51430 LOC_Os01g11580 LOC_Os05g30800 LOC_Os01g16190 LOC_Os02g15220 LOC_Os02g05340 More.. |
| Downstream Genes | LOC_Os09g17840 LOC_Os09g17830 LOC_Os12g30540 LOC_Os11g36470 LOC_Os07g06950 LOC_Os09g21110 LOC_Os08g40180 LOC_Os06g48640 LOC_Os09g32650 LOC_Os09g15750 LOC_Os10g30580 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g19680.1 |
| Rice Genome Annotation | LOC_Os06g19680.1 |
| Ricechip | LOC_Os06g19680.1 |
| KEGG | osa:4340826 dosa:Os06t0301000-01 |
| Entrez-Gene | 4340826 |