RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g22560.1 View Network Show in Genome Browser |
| Other Names | |
| Description | formyl transferase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 13117696-13120470 Nucleotide Length: 801 |
| Protein-coding | LOC_Os06g22560 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g61600 LOC_Os01g65260 LOC_Os05g35580 LOC_Os05g37390 LOC_Os04g55290 LOC_Os01g63890 LOC_Os05g01440 LOC_Os01g66500 LOC_Os02g35700 LOC_Os04g51380 LOC_Os02g03540 More.. |
| Downstream Genes | LOC_Os09g29190 LOC_Os08g09210 LOC_Os08g10570 LOC_Os06g39440 LOC_Os10g41450 LOC_Os07g07020 LOC_Os09g27420 LOC_Os12g09540 LOC_Os12g05410 LOC_Os10g41960 LOC_Os07g13270 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00630 rn00670 rn00230 rn01100 rn01110 |
| Metacyc Pathways | 1CMET2-PWY PWY-2201 FOLSYN-PWY DENOVOPURINE2-PWY PWY-841 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g22560.1 |
| Rice Genome Annotation | LOC_Os06g22560.1 |
| Ricechip | LOC_Os06g22560.1 |