RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g22650.1 View Network Show in Genome Browser |
| Other Names | Os06g0332400 |
| Description | VHS and GAT domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 13162901-13171017 Nucleotide Length: 2052 |
| Protein-coding | LOC_Os06g22650 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g13160 LOC_Os02g19170 LOC_Os01g12880 LOC_Os05g27320 LOC_Os06g07090 LOC_Os02g56110 LOC_Os03g23950 LOC_Os04g51120 LOC_Os03g11720 LOC_Os02g17350 LOC_Os05g41060 More.. |
| Downstream Genes | LOC_Os08g08830 LOC_Os12g01390 LOC_Os11g01380 LOC_Os07g03160 LOC_Os07g12200 LOC_Os07g12170 LOC_Os07g30300 LOC_Os11g09329 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g22650.1 |
| Rice Genome Annotation | LOC_Os06g22650.1 |
| Ricechip | LOC_Os06g22650.1 |
| KEGG | osa:4340925 dosa:Os06t0332400-01 |
| Entrez-Gene | 4340925 |