RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g22919.1 View Network Show in Genome Browser |
| Other Names | Os06g0335975,Os06g0335900 |
| Description | DEFL9 - Defensin and Defensin-like DEFL family, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 13375503-13390470 Nucleotide Length: 936 |
| Protein-coding | LOC_Os06g22919 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g19270 LOC_Os05g41610 LOC_Os04g51520 LOC_Os04g51460 LOC_Os04g51450 LOC_Os01g58730 LOC_Os06g13040 LOC_Os04g51510 LOC_Os03g01800 LOC_Os03g49580 LOC_Os02g57770 More.. |
| Downstream Genes | LOC_Os08g13920 LOC_Os12g43700 LOC_Os10g26660 LOC_Os09g07820 LOC_Os07g44660 LOC_Os06g48200 LOC_Os06g48160 LOC_Os06g48180 LOC_Os06g48170 LOC_Os11g33270 LOC_Os08g13980 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5340 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g22919.1 |
| Rice Genome Annotation | LOC_Os06g22919.1 |
| Ricechip | LOC_Os06g22919.1 |
| KEGG | osa:4340940 dosa:Os06t0335975-00dosa:Os06t0335900-02 |