RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g23440.1 View Network Show in Genome Browser |
| Other Names | Os06g0342200 |
| Description | eukaryotic translation initiation factor 1A, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 13685422-13686180 Nucleotide Length: 435 |
| Protein-coding | LOC_Os06g23440 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g18380 LOC_Os03g18570 LOC_Os03g18580 LOC_Os01g25610 LOC_Os01g04730 LOC_Os02g01560 LOC_Os01g14830 LOC_Os05g27940 LOC_Os04g42380 LOC_Os03g58050 LOC_Os03g08440 More.. |
| Downstream Genes | LOC_Os07g05580 LOC_Os07g12650 LOC_Os10g41470 LOC_Os12g05430 LOC_Os10g27190 LOC_Os07g08330 LOC_Os06g48350 LOC_Os07g07709 LOC_Os09g15770 LOC_Os11g05370 LOC_Os08g10608 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g23440.1 |
| Rice Genome Annotation | LOC_Os06g23440.1 |
| Ricechip | LOC_Os06g23440.1 |
| KEGG | osa:4340958 dosa:Os06t0342200-01 |
| Entrez-Gene | 4340958 |