RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g28060.1 View Network Show in Genome Browser |
| Other Names | Os06g0474900 |
| Description | ATP-binding region, ATPase-like domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 15922985-15933058 Nucleotide Length: 2463 |
| Protein-coding | LOC_Os06g28060 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g37920 LOC_Os01g72880 LOC_Os03g25400 LOC_Os04g01740 LOC_Os02g50799 LOC_Os02g50790 |
| Downstream Genes | LOC_Os09g30412 LOC_Os09g30418 LOC_Os08g39140 LOC_Os06g50300 LOC_Os07g44330 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR396a-5p osa-miR396b-5p osa-miR2919 osa-miR396c-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g28060.1 |
| Rice Genome Annotation | LOC_Os06g28060.1 |
| Ricechip | LOC_Os06g28060.1 |
| KEGG | osa:4341033 dosa:Os06t0474900-01 |
| Entrez-Gene | 4341033 |