RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g28194.1 View Network Show in Genome Browser |
| Other Names | Os06g0476200 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 16011323-16023663 Nucleotide Length: 1878 |
| Protein-coding | LOC_Os06g28194 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g53020 LOC_Os04g55180 LOC_Os01g65460 LOC_Os05g34470 LOC_Os02g53400 LOC_Os01g68450 LOC_Os01g71720 LOC_Os03g22050 LOC_Os02g39970 LOC_Os04g55210 LOC_Os01g63410 More.. |
| Downstream Genes | LOC_Os08g32930 LOC_Os08g19140 LOC_Os07g38230 LOC_Os08g43190 LOC_Os08g26870 LOC_Os09g37620 LOC_Os07g26940 LOC_Os08g30930 LOC_Os09g23110 LOC_Os12g32240 LOC_Os07g43560 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00051 rn00520 rn01100 rn01110 rn00010 rn00052 rn00500 rn01120 |
| Metacyc Pathways | PWY-882 MANGDPMET-PWY P61-PWY PWY-622 PWY-842 PWY-621 PWY-3801 SUCSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g28194.1 |
| Rice Genome Annotation | LOC_Os06g28194.1 |
| Ricechip | LOC_Os06g28194.1 |
| KEGG | osa:4341038 dosa:Os06t0476200-01 |
| Entrez-Gene | 4341038 |